Tagging SNPs in the ERCC4 gene are associated with gastric cancer risk

ERCC4 plays an essential role in the nucleotide excision repair (NER) pathway, which is involved in the removal of a wide variety of DNA lesions. To determine whether the ERCC4 tagging SNPs (tSNPs) are associated with risk of gastric cancer, we conducted a hospital-based case-control study of 350 cases and 468 cancer-free controls. In the logistic regression (LR) analysis, we found a significantly decreased risk of gastric cancer associated with the rs744154 GC/CC genotypes [adjusted odds ratio (OR) = 0.56, 95% confidence interval (CI) = 0.42–0.75, false discovery rate (FDR) P = 0.003] compared with the wild-type GG genotype. Haplotype-based association study revealed that the CGC haplotype that containing the rs744154 C allele can decrease the risk of gastric cancer compared with the most common haplotype GGT (adjusted OR = 0.61, 95% CI = 0.46–0.81). Using the multifactor dimensionality reduction (MDR) analysis, we identified that the SNP rs744154 and smoking status were the best two predictive factors for gastric cancer with a testing accuracy of 55.76% and a perfect cross-validation consistency (CVC) of 10 (P = 0.001). Furthermore, the smokers with the rs744154 GC/CC genotypes showed a decreased risk of gastric cancer (adjusted OR = 0.55, 95% CI = 0.35–0.85) compared with the smokers with the GG genotype using multivariate LR analysis. The above findings consistently suggested that genetic variants in the ERCC4 gene may play a protective role in the etiology of gastric cancer, even in the smokers.     

北京西山地区大山雀与其它鸟类种群种间联结分析

引入2*2列联表联结指数法,用固定样带法月连续全天定位调查数据,以森林鸟类广布种山雀科大山雀(Parus major)为目标种,研究了北京西山地区该种与留鸟、夏候鸟、冬候鸟、旅鸟的种间联结关系,结合前人关于营巢行为、取食行为、生态位等方面成果分析了产生联结的原因,首次确立了鸟类群落种间联结的研究方法。结果表明： （1）用固定样带法月连续全天定位调查,引入2*2列联表以日尺度的定性数据检验与测定联结度,与月尺度的联结频率结合起来,分析鸟类群落的种间联结是可行的;鸟类群落的种间联结具有时间与空间尺度的双重属性,鸟类群落的种间联结度不仅是鸟类群落时空结构与格局的表征,同时,反映了鸟类群落的动态性,而且,鸟类群落的种间联结对栖息的植物群落具有依赖性与关联性。 （2）日尺度上,选择χ2统计量、PCC与PC指数相结合进行种间联结检验、测度,能充分反映鸟类群落的种间联结特征,但由于鸟类的居留、繁殖、迁移等季节动态性特征,种间联结度存有不确定性。 （3）月尺度上,鸟类总体种间联结8月份为显著负联结,其余各月为显著正联结;根据PCC联结度的月联结频率,可将鸟类划分为正联结组、正负联结均较弱组、负联结组;大山雀与留鸟、夏候鸟、冬候鸟、旅鸟等不同居留型的联结关系,随着种数的减少,显著联结种对、联结度、联结复杂程度呈递减趋势。大山雀与留鸟的联结：与鸦科鸟类呈明显正联结,与同科鸟类呈正负均等的弱联结并趋于负联结,与体型较大的雉、啄木鸟、乌鸦等鸟类呈负联结。大山雀与夏候鸟的联结：与杜鹃科四声杜鹃呈正联结,与同科的黄腹山雀、鹟科的白眉姬正负联结均较弱,与莺科的黄腰柳莺、鸫科的北红尾鸲等呈负联结。大山雀与冬候鸟的联结：与岩鹨科棕眉山岩鹨的正负联结均较弱,与鸫科的斑鸫、鹀科多种鸟类呈明显的负联结。大山雀与旅鸟的联结：与莺科鸟类由正负联结均较弱到明显的负联结。     

桂西南岩溶山地不同土地利用方式土壤微生物量及其活性特征

以广西平果县石漠化典型岩溶山地为研究区域,选择海拔接近的稀疏次生林地、灌丛、荒草地、裸地和农田等5种主要土地利用方式为研究对象,研究土壤微生物生物量及其活性的变异特征。结果表明:在不同土地利用方式下,随着植被的恢复,土壤养分含量不断提高,大小顺序表现为次生林>灌丛>农田>荒草地>裸地。土壤微生物量和呼吸强度变化显著(P<0.05),其中微生物量总体呈上升趋势,次生林和灌丛增幅较大,荒草地和裸地增幅较小;土壤基础呼吸强度除荒草地之外均显著增加,和土壤养分含量的变化趋势相一致。代谢熵(qCO2)变化规律不同,大小关系表现为:灌丛>农田>次生林>荒草地>裸地。不同土地利用方式下,由于相应地上、地下资源输入等环境因素的改变导致了土壤微生物量的差异性。为实现桂西南石漠化地区岩溶山地土壤生态系统的健康发展,从土壤生物学角度出发,积极推进植被生态恢复工程,尽可能减少人为活动对土地的干扰程度更有利于提高土壤质量。     

北京松山国家级自然保护区兰科植物多样性及其保护评价

选取北京松山国家级自然保护区开展兰科植物多样性调查和分析,评估其保护现状。松山共有兰科植物12属18种,其中北方盔花兰为北京新记录种。在生活型方面,以地生兰为主,计14种（77．78％）,腐生兰4种（22．22％）;在分布区类型方面,属的区系成分以北温带分布为主（6属,5000％）,兼有旧世界温带分布（3属,25．00％）、世界分布（2属,16．67％）和旧世界热带分布（1属,8．33％）;种的区系成分以东亚分布为主（9种,50．00％）,兼有旧世界温带分布（5种,27．78％）和北温带分布（4种,22．22％）。松山兰科植物集中分布于北沟和小海坨山。通过综合分析松山兰科植物保护现状,提出生境评估、种群动态监测、建立迁地保护资源圃和加大宣传等都是切实加强兰科植物保护工作的可行措施。     

A genetic adaptive pattern＊low hemoglobin concentration in the himalayan highlanders

Mean hemoglobin （Hb） concentration of about 3 500 subjects derived from 17 studies of Himalayan highlanders （Tibetans, Sherpas, and Ladakhis） was compared with lowlanders （Chinese Han, Indian Tamils） lived in the Himalayas, and European climbers during Everest expeditions as well as Andean natives. The results found that Hb concentration in Himalayan highlanders was systemically lower than those reported for Andean natives and lowland immigrants. These comparative data demonstrated that a healthy native population may successfully reside at high altitude without a significant elevation in Hb, and the lower Hb levels of Himalayan highlanders than those of migrated lowlanders and Andean natives are an example of favourable adaptation over the generations. In addition, excessive polycythemia has frequently been used as a marker of chronic mountain sickness （CMS）. Altitude populations who have a higher Hb concentration also have a higher incidence of CMS. The low Hb in Himalayans suggested as showing adaptation over many generations in Tibetan stock. Recent work in Tibet, suggested that Tibetans there may have adapted to high altitude as a result of evolutionary pressure selecting for genes which give an advantage at altitude. All of the population genomic and statistical analysis indicated that EPAS1 and EGLN1 are mostly likely responsible for high altitude adaptation and closely related to low Hb concentration in Tibetans. These data supported the hypothesis that Himalayan highlanders have evolved a genetically different erythropoietic response to chronic hypoxia by virtue of their much longer exposure to high altitude.     

Phylogenetic plant community structure along elevation is lineage specific

The trend of closely related taxa to retain similar environmental preferences mediated by inherited traits suggests that several patterns observed at the community scale originate from longer evolutionary processes. While the effects of phylogenetic relatedness have been previously studied within a single genus or family, lineage‐specific effects on the ecological processes governing community assembly have rarely been studied for entire communities or flora. Here, we measured how community phylogenetic structure varies across a wide elevation gradient for plant lineages represented by 35 families, using a co‐occurrence index and net relatedness index (NRI). We propose a framework that analyses each lineage separately and reveals the trend of ecological assembly at tree nodes. We found prevailing phylogenetic clustering for more ancient nodes and overdispersion in more recent tree nodes. Closely related species may thus rapidly evolve new environmental tolerances to radiate into distinct communities, while older lineages likely retain inherent environmental tolerances to occupy communities in similar environments, either through efficient dispersal mechanisms or the exclusion of older lineages with more divergent environmental tolerances. Our study illustrates the importance of disentangling the patterns of community assembly among lineages to better interpret the ecological role of traits. It also sheds light on studies reporting absence of phylogenetic signal, and opens new perspectives on the analysis of niche and trait conservatism across lineages.     

Seed and microsite limitation in Rheum nobile,a rare and endemic plant from the subnival zone of Sino-Himalaya

Background: Species persistence, particularly in monocarpic species, depends on the successful recruitment of individuals. An understanding of the factors that limit the recruitment of rare monocarpic plant species is therefore vital for their conservation.

Aims: To identify the factors limiting the recruitment of Rheum nobile, a rare and highly specialised monocarpic giant herb endemic to the high eastern Himalayas.

Methods: Seed sowing (seeds added or not added) and seedling transplanting experiments were conducted in disturbed (vegetation removed) and undisturbed plots in the vicinity of established populations of R. nobile to explore the mechanisms of recruitment limitation. Four levels of photosynthetically active radiation (0, 15, 30 and 50 μmol m^?2 s^?1) and two sowing positions (beneath and above grass litter or moss layer) were manipulated in the laboratory to determine how ground cover limited seedling emergence.

Results: Seed addition increased seedling recruitment. Disturbance significantly increased seedling emergence and establishment. Seed germination significantly decreased with the reduction of light availability, but 31.7% of all seeds germinated in complete darkness. Seedling emergence was close to zero when seeds were sown on top of a layer of grass litter or moss, but rose to 34.5% when the seeds were sown beneath such layers.

Conclusions: Our results indicate that the recruitment of R. nobile is limited by a combination of seed and microsite availability. Therefore, in order to conserve this species, we suggest adding seeds to suitable sites and implementing soil disturbances in existing populations to create suitable microsites.